PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G05120.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 297aa    MW: 33595.3 Da    PI: 10.719
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G05120.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.4e-11961671895
                      --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      lp + +++++g    +k ltl +++++  +v+l  +k++++++++kGWk+Fv+  +L++g  v F++++ s+  l + 
  ONIVA10G05120.2  96 LPPEIVARCNGH--DGKHLTLVTRNSKPVNVRL--EKRGQSFYISKGWKKFVELTDLRVGQCVRFSVSSPST--LDLL 167
                      677777777655..4568***************..*******************************654333..4444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.79E-1492172IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-1395172IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.26396172IPR003340B3 DNA binding domain
PfamPF023629.2E-996164IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-11221294IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-6222293IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.161261297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEGSLSGGAD QRWARRCERG WSSSSSRRHP PRPSKPQANK EKKGAIQRVV QAQCSLSTSL  60
RLTAHVTSSI VHEQSSNIRY GENRKHGQRY AYHEPLPPEI VARCNGHDGK HLTLVTRNSK  120
PVNVRLEKRG QSFYISKGWK KFVELTDLRV GQCVRFSVSS PSTLDLLILD KHGTSLAIPP  180
SKRDLKLKSK RSTHQDSKGH PSNTDPGPSR IINRRYFSKR YPIDHLEQLM TGRTEDIEVQ  240
TLVGPSVNMV LHTSTDHRCN LKKGWTDFAL SNGIKLNTVC IFHFYKTTHL GVIVDIF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8332320.0CT833232.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA237C07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ7XFU91e-180Y1030_ORYSJ; B3 domain-containing protein Os10g0323000
TrEMBLA0A0E0IQI70.0A0A0E0IQI7_ORYNI; Uncharacterized protein
STRINGLOC_Os10g17630.11e-178(Oryza sativa Japonica Group)